Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ICGBPKNH_77 | 137730 | 138695 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| ICGBPKNH_4 | 77018 | 78943 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| ICGBPKNH_18 | 43820 | 44557 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| ICGBPKNH_57 | 1887 | 2687 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ICGBPKNH_77 | 137730 | 138695 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| ICGBPKNH_77 | 137730 | 138695 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| ICGBPKNH_77 | 137730 | 138695 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| ICGBPKNH_77 | 137730 | 138695 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| ICGBPKNH_18 | 43820 | 44557 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| ICGBPKNH_57 | 1887 | 2687 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| ICGBPKNH_4 | 77018 | 78943 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ICGBPKNH_77 | 137733 | 138695 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| ICGBPKNH_18 | 43823 | 44557 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| ICGBPKNH_57 | 1887 | 2684 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| ICGBPKNH_4 | 77018 | 78940 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ICGBPKNH_88 | 55071 | 56651 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ICGBPKNH_1 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_2 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_3 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_4 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_5 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_6 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_7 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_8 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_9 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_10 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_11 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_12 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_13 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_14 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_15 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_16 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_17 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_18 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_19 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_20 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_21 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_22 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_23 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_24 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_25 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_26 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_27 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_28 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_29 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_30 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_31 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_32 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_33 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_34 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_35 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_36 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_37 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_38 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_39 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_40 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_41 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_42 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_43 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_44 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_45 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_46 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_47 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_48 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_49 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_50 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_52 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_53 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_54 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_55 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_56 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_57 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_58 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_59 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_60 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_61 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_62 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_63 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_64 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_65 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_66 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_67 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_68 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_69 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_70 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_71 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_72 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_73 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_74 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_75 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_76 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_77 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_78 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_79 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_81 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_82 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_83 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_84 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_85 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_87 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_88 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_89 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_91 | 1.0 | 0.0 | 1.0 |
| ICGBPKNH_92 | 0.0 | 1.0 | 0.0 |
| ICGBPKNH_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ICGBPKNH_2 | 87073 | 101323 | False | Unknown | VOG3992, |
| ICGBPKNH_38 | 9323 | 18843 | False | Siphoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)