Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKGELPOD_11 | 83869 | 85794 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IKGELPOD_11 | 83869 | 85794 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKGELPOD_11 | 83869 | 85791 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IKGELPOD_27 | 61563 | 63143 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IKGELPOD_114 | 1834 | 1987 | Col156 | 154 / 154 | 94.16 | NC009781 |
| IKGELPOD_8 | 843 | 1095 | Col(MG828) | 253 / 262 | 92.89 | NC008486 |
| IKGELPOD_107 | 1429 | 1630 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
| IKGELPOD_102 | 1414 | 1533 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKGELPOD_2 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_4 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_5 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_6 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_7 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_8 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_9 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_10 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_11 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_13 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_14 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_15 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_16 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_17 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_19 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_20 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_21 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_22 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_23 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_24 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_25 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_26 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_27 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_28 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_29 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_30 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_31 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_32 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_33 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_34 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_35 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_36 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_37 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_38 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_39 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_40 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_41 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_42 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_43 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_44 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_45 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_46 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_47 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_48 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_49 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_50 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_51 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_52 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_53 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_54 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_55 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_56 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_57 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_58 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_59 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_60 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_61 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_62 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_63 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_64 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_65 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_66 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_67 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_68 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_69 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_70 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_71 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_72 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_73 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_74 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_75 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_76 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_77 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_78 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_79 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_80 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_81 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_82 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_83 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_84 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_85 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_86 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_87 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_88 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_89 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_90 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_91 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_92 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_93 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_94 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_95 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_96 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_97 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_98 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_99 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_100 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_102 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_103 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_104 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_105 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_106 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_107 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_108 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_109 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_110 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_111 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_112 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_113 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_114 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_115 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_116 | 0.0 | 1.0 | 0.0 |
| IKGELPOD_117 | 1.0 | 0.0 | 1.0 |
| IKGELPOD_118 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)