Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIJHEABC_24 | 86065 | 87990 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIJHEABC_24 | 86065 | 87990 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIJHEABC_24 | 86065 | 87987 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIJHEABC_29 | 62119 | 63699 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIJHEABC_2 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_3 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_4 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_5 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_6 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_7 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_11 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_12 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_13 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_14 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_15 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_16 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_17 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_18 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_19 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_20 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_22 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_23 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_24 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_25 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_26 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_27 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_28 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_29 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_30 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_31 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_32 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_33 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_34 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_35 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_36 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_37 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_38 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_39 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_40 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_41 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_42 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_43 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_44 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_45 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_46 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_47 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_48 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_49 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_50 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_51 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_52 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_53 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_54 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_55 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_56 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_57 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_58 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_59 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_60 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_61 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_62 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_63 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_64 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_65 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_66 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_67 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_68 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_69 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_70 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_71 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_72 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_73 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_74 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_75 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_76 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_77 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_78 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_79 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_80 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_81 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_82 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_83 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_84 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_85 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_86 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_87 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_88 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_89 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_90 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_91 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_92 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_93 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_94 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_95 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_96 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_97 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_98 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_99 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_100 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_101 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_102 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_103 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_104 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_105 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_106 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_109 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_110 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_111 | 0.0 | 1.0 | 0.0 |
| GIJHEABC_112 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_113 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_114 | 1.0 | 0.0 | 1.0 |
| GIJHEABC_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)