Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMKLGPOD_26 | 7697 | 9622 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMKLGPOD_26 | 7697 | 9622 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMKLGPOD_26 | 7700 | 9622 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMKLGPOD_27 | 5857 | 4277 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMKLGPOD_1 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_2 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_3 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_4 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_5 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_6 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_7 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_8 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_9 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_10 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_11 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_12 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_13 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_14 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_15 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_16 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_17 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_18 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_19 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_20 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_21 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_22 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_23 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_24 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_25 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_26 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_27 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_28 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_29 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_30 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_31 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_32 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_33 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_34 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_35 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_36 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_37 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_38 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_39 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_40 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_41 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_42 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_43 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_44 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_45 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_46 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_47 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_48 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_49 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_50 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_51 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_52 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_53 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_55 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_56 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_57 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_58 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_59 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_60 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_61 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_62 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_63 | 1.0 | 0.0 | 1.0 |
| HMKLGPOD_64 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_65 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_66 | 0.0 | 1.0 | 0.0 |
| HMKLGPOD_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)