Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MIECGKHD_64 | 110286 | 111251 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MIECGKHD_64 | 110286 | 111251 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| MIECGKHD_64 | 110286 | 111251 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| MIECGKHD_64 | 110286 | 111251 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| MIECGKHD_64 | 110286 | 111251 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MIECGKHD_64 | 110286 | 111248 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| MIECGKHD_15 | 17858 | 18811 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MIECGKHD_4 | 134111 | 132531 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MIECGKHD_46 | 2117 | 2697 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MIECGKHD_1 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_2 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_3 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_4 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_5 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_6 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_7 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_8 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_9 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_10 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_11 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_12 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_13 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_14 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_15 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_16 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_17 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_18 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_19 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_20 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_21 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_22 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_23 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_24 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_25 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_26 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_27 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_28 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_29 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_30 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_31 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_32 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_33 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_34 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_35 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_36 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_37 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_38 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_39 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_40 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_41 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_42 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_43 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_44 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_45 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_46 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_47 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_49 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_50 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_51 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_52 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_54 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_55 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_56 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_57 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_58 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_59 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_60 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_61 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_62 | 1.0 | 0.0 | 1.0 |
| MIECGKHD_63 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_64 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_65 | 0.0 | 1.0 | 0.0 |
| MIECGKHD_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MIECGKHD_4 | 6214 | 20698 | False | Myoviridae | VOG4572, |
| MIECGKHD_5 | 107931 | 117088 | True | Siphoviridae | VOG2703, |
| MIECGKHD_11 | 180607 | 184905 | False | Siphoviridae | VOG5278, |
| MIECGKHD_55 | 198540 | 210665 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)