Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJKIIHFL_11 | 110286 | 111251 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJKIIHFL_11 | 110286 | 111251 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PJKIIHFL_11 | 110286 | 111251 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PJKIIHFL_11 | 110286 | 111251 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PJKIIHFL_11 | 110286 | 111251 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJKIIHFL_11 | 110286 | 111248 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PJKIIHFL_16 | 18417 | 19370 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJKIIHFL_27 | 4917 | 3337 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJKIIHFL_74 | 410 | 1089 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJKIIHFL_1 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_2 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_3 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_4 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_5 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_6 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_7 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_8 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_9 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_10 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_11 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_12 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_13 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_14 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_15 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_16 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_17 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_18 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_19 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_20 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_21 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_22 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_23 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_24 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_25 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_26 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_27 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_28 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_29 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_30 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_31 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_32 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_33 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_34 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_35 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_36 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_37 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_38 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_40 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_41 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_42 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_43 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_44 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_45 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_46 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_47 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_48 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_49 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_50 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_51 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_52 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_54 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_55 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_56 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_58 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_59 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_60 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_61 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_62 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_63 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_64 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_65 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_66 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_67 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_68 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_69 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_70 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_71 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_72 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_73 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_74 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_75 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_76 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_77 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_78 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_79 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_80 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_81 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_82 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_83 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_85 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_86 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_87 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_88 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_89 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_90 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_91 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_92 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_93 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_95 | 1.0 | 0.0 | 1.0 |
| PJKIIHFL_96 | 0.0 | 1.0 | 0.0 |
| PJKIIHFL_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJKIIHFL_5 | 6214 | 20698 | False | Myoviridae | VOG4572, |
| PJKIIHFL_6 | 107931 | 117088 | True | Siphoviridae | VOG2703, |
| PJKIIHFL_12 | 233124 | 238421 | False | Siphoviridae | VOG10904, |
| PJKIIHFL_77 | 198691 | 210352 | False | Myoviridae | VOG9471, |
Phigaro v2.4.0 (Database: Jan. 2024 release)