Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AEKPEBNG_90 | 110286 | 111251 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AEKPEBNG_90 | 110286 | 111251 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| AEKPEBNG_90 | 110286 | 111251 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| AEKPEBNG_90 | 110286 | 111251 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| AEKPEBNG_90 | 110286 | 111251 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AEKPEBNG_90 | 110286 | 111248 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| AEKPEBNG_17 | 17463 | 18416 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AEKPEBNG_8 | 134111 | 132531 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AEKPEBNG_59 | 1794 | 2374 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AEKPEBNG_1 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_2 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_3 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_4 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_5 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_6 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_7 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_8 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_9 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_10 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_11 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_12 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_13 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_14 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_15 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_16 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_17 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_18 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_19 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_20 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_21 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_22 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_23 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_24 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_25 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_26 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_27 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_28 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_29 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_30 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_31 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_32 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_33 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_34 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_35 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_36 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_37 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_38 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_39 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_40 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_41 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_42 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_43 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_44 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_45 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_46 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_47 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_48 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_49 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_50 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_51 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_52 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_53 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_54 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_55 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_56 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_57 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_58 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_59 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_60 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_61 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_62 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_63 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_64 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_65 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_66 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_67 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_68 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_69 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_70 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_71 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_72 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_73 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_74 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_75 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_76 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_78 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_79 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_80 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_81 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_82 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_83 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_84 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_85 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_86 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_87 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_88 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_89 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_90 | 0.0 | 1.0 | 0.0 |
| AEKPEBNG_91 | 1.0 | 0.0 | 1.0 |
| AEKPEBNG_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AEKPEBNG_8 | 6214 | 20698 | False | Myoviridae | VOG4572, |
| AEKPEBNG_14 | 181263 | 184587 | False | Siphoviridae | VOG4544, |
| AEKPEBNG_29 | 18707 | 24226 | True | Siphoviridae | VOG2703, |
| AEKPEBNG_80 | 198540 | 210201 | False | Myoviridae | VOG9471, |
Phigaro v2.4.0 (Database: Jan. 2024 release)