Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDHPDLMN_25 | 7697 | 9622 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDHPDLMN_25 | 7697 | 9622 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDHPDLMN_25 | 7700 | 9622 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BDHPDLMN_4 | 102871 | 101291 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDHPDLMN_1 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_2 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_3 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_4 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_5 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_6 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_7 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_8 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_9 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_10 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_11 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_12 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_13 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_14 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_15 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_16 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_17 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_18 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_19 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_20 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_21 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_22 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_23 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_24 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_25 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_26 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_27 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_28 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_29 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_30 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_31 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_32 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_33 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_34 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_35 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_36 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_37 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_38 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_39 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_40 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_41 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_42 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_44 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_45 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_46 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_49 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_50 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_52 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_53 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_54 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_55 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_56 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_57 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_58 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_59 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_60 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_61 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_62 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_63 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_64 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_65 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_66 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_67 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_68 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_69 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_70 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_72 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_74 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_75 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_76 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_77 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_78 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_79 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_80 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_81 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_82 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_84 | 1.0 | 0.0 | 1.0 |
| BDHPDLMN_85 | 0.0 | 1.0 | 0.0 |
| BDHPDLMN_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)