Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DIGILDNI_191 | 73664 | 74629 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DIGILDNI_191 | 73664 | 74629 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DIGILDNI_191 | 73664 | 74629 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DIGILDNI_191 | 73664 | 74629 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DIGILDNI_191 | 73664 | 74629 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DIGILDNI_191 | 73667 | 74629 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DIGILDNI_155 | 18417 | 19370 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DIGILDNI_177 | 31203 | 32783 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DIGILDNI_238 | 1800 | 2380 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DIGILDNI_1 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_2 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_3 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_4 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_5 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_6 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_7 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_8 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_9 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_10 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_11 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_12 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_13 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_14 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_15 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_16 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_17 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_18 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_19 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_20 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_21 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_22 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_23 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_24 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_25 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_26 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_27 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_28 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_29 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_30 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_31 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_32 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_33 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_34 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_35 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_36 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_37 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_38 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_39 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_40 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_41 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_42 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_43 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_44 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_45 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_46 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_47 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_48 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_49 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_50 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_51 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_52 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_53 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_54 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_55 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_56 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_57 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_58 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_59 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_60 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_61 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_62 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_63 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_64 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_65 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_66 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_67 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_68 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_69 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_70 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_71 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_72 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_73 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_74 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_75 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_76 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_77 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_78 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_79 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_80 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_81 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_82 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_83 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_84 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_85 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_86 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_87 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_88 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_89 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_90 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_91 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_92 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_93 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_94 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_95 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_96 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_97 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_98 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_99 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_100 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_101 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_102 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_103 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_104 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_105 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_106 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_107 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_108 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_109 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_110 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_111 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_112 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_113 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_114 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_115 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_116 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_117 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_118 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_119 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_120 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_121 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_122 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_124 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_125 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_126 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_127 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_128 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_129 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_130 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_131 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_132 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_133 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_134 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_135 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_136 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_137 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_138 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_139 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_140 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_141 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_142 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_143 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_144 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_145 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_146 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_147 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_148 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_149 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_150 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_151 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_152 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_153 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_154 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_155 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_156 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_157 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_158 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_159 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_160 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_161 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_162 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_163 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_164 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_165 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_166 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_167 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_168 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_169 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_170 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_171 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_172 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_173 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_174 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_175 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_176 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_177 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_179 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_180 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_181 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_182 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_183 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_184 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_185 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_186 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_187 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_188 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_189 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_190 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_191 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_192 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_193 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_194 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_195 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_196 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_197 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_198 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_199 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_200 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_201 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_202 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_203 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_204 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_205 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_206 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_207 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_208 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_209 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_210 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_211 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_212 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_213 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_214 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_215 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_216 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_217 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_218 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_219 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_220 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_221 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_222 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_223 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_224 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_225 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_226 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_227 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_228 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_229 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_230 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_231 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_232 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_233 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_234 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_235 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_236 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_237 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_238 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_239 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_240 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_241 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_242 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_243 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_244 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_245 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_246 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_247 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_248 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_249 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_250 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_251 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_252 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_253 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_254 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_255 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_256 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_257 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_258 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_259 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_260 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_261 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_262 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_263 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_264 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_265 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_266 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_267 | 1.0 | 0.0 | 1.0 |
| DIGILDNI_268 | 0.0 | 1.0 | 0.0 |
| DIGILDNI_269 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DIGILDNI_99 | 76240 | 84234 | True | Siphoviridae | VOG2703, |
| DIGILDNI_111 | 202540 | 206838 | False | Siphoviridae | VOG10904, |
| DIGILDNI_199 | 6214 | 20698 | False | Myoviridae | VOG4572, |
| DIGILDNI_225 | 198540 | 210665 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)