Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACBEPFKG_1 | 2896783 | 2897691 | CblA-1 | ARO:3002999 | CblA-1 | 97.97 | 102.03 | GQ343019.1 |
| ACBEPFKG_1 | 2226204 | 2227352 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.48 | 95.26 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ACBEPFKG_1 | 2058210 | 2059375 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 99.91 | M37699 |
| ACBEPFKG_1 | 2522355 | 2523151 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 99.50 | M17808 |
| ACBEPFKG_1 | 425243 | 427165 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.60 | 99.84 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACBEPFKG_1 | 2522358 | 2523002 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.53 | 80.83 | WP_002682030.1 |
| ACBEPFKG_1 | 2226204 | 2227349 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.48 | 95.26 | WP_063853729.1 |
| ACBEPFKG_1 | 2058210 | 2059175 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | PARTIALX | 99.07 | 82.99 | WP_063856436.1 |
| ACBEPFKG_1 | 2896804 | 2897691 | cblA | CblA family class A beta-lactamase | BLASTX | 97.97 | 100.00 | WP_005827792.1 |
| ACBEPFKG_1 | 2227516 | 2227941 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | PARTIALX | 97.89 | 82.35 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ACBEPFKG_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ACBEPFKG_1 | 2173344 | 2186945 | False | Myoviridae | VOG8625, |
| ACBEPFKG_1 | 3580827 | 3585700 | False | Siphoviridae | VOG4755, |
Phigaro v2.4.0 (Database: Jan. 2024 release)