Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| APMKGJCD_36 | 9504 | 8803 | WalR | 1.54e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| APMKGJCD_18 | 2947 | 3876 | rep28 | 930 / 930 | 98.49 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APMKGJCD_1 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_2 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_3 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_4 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_5 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_6 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_7 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_8 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_9 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_10 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_11 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_12 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_13 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_14 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_15 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_16 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_17 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_18 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_19 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_20 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_22 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_23 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_24 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_25 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_27 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_28 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_29 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_30 | 1.0 | 0.0 | 1.0 |
| APMKGJCD_31 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_32 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_33 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_34 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_35 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_36 | 0.0 | 1.0 | 0.0 |
| APMKGJCD_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APMKGJCD_1 | 48305 | 60788 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
| APMKGJCD_22 | 24890 | 56534 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6307, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG2621, VOG1887, VOG3434, VOG4564, VOG0720, VOG7407, VOG0052, VOG5343, VOG4214, VOG0198, VOG6005 |
| APMKGJCD_22 | 121474 | 153836 | False | Siphoviridae | VOG1637, VOG0703, VOG7892, VOG4599, VOG4605, VOG4605, VOG4545, VOG0209, VOG4586, VOG0207, VOG0539, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0198, VOG0376, VOG7110, VOG4673, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8222, VOG0650, VOG1302 |
Phigaro v2.4.0 (Database: Jan. 2024 release)