Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDDAOGAA_29 | 235948 | 235244 | WalR | 4.64e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CDDAOGAA_31 | 162265 | 162068 | CspR | 1.30e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CDDAOGAA_7 | 24757 | 25815 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDDAOGAA_1 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_2 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_3 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_4 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_5 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_6 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_7 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_8 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_9 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_10 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_11 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_12 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_13 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_14 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_15 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_16 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_17 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_18 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_19 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_20 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_21 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_22 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_23 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_24 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_27 | 1.0 | 0.0 | 1.0 |
| CDDAOGAA_28 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_29 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_30 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_31 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_32 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_33 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_34 | 0.0 | 1.0 | 0.0 |
| CDDAOGAA_35 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDDAOGAA_33 | 106606 | 144816 | False | Siphoviridae | VOG4918, VOG0054, VOG1637, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG10904, VOG4570, VOG0198, VOG9281, VOG3643, VOG0152, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309, VOG0181, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)