Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KFNNCLEA_4 | 2729058 | 2729762 | WalR | 1.75e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KFNNCLEA_1 | 11205 | 11834 | rep38 | 631 / 903 | 90.02 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KFNNCLEA_1 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_2 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_3 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_4 | 0.0 | 1.0 | 0.0 |
| KFNNCLEA_5 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_6 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_7 | 1.0 | 0.0 | 1.0 |
| KFNNCLEA_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KFNNCLEA_4 | 72011 | 106277 | False | Siphoviridae | VOG8222, VOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0159, VOG1298, VOG0195, VOG0044, VOG9671, VOG4673, VOG9281, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| KFNNCLEA_4 | 1662954 | 1689951 | False | Siphoviridae | VOG8294, VOG4783, VOG4705, VOG8438, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG5616, VOG1183, VOG3691, VOG0198 |
| KFNNCLEA_4 | 1691788 | 1696211 | False | Unknown | VOG4566, VOG0186, VOG1309, VOG9667 |
| KFNNCLEA_4 | 1704072 | 1717627 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)