Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALPMHFHA_1 | 37770 | 38474 | WalR | 3.85e-113 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ALPMHFHA_2 | 22212 | 23246 | rep38 | 1045 / 1104 | 82.39 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALPMHFHA_1 | 0.0 | 1.0 | 0.0 |
| ALPMHFHA_2 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_3 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_4 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_5 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_6 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_7 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_8 | 1.0 | 0.0 | 1.0 |
| ALPMHFHA_9 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALPMHFHA_1 | 534187 | 539280 | False | Siphoviridae | VOG4567, VOG4489, VOG4602, VOG9667, VOG3547, VOG3549 |
| ALPMHFHA_1 | 543786 | 566891 | False | Siphoviridae | VOG1183, VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4626, VOG8438, VOG4705 |
| ALPMHFHA_1 | 2054746 | 2057129 | False | Unknown | VOG3643, VOG0044 |
| ALPMHFHA_1 | 2068969 | 2077357 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| ALPMHFHA_1 | 2089253 | 2115212 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG0703, VOG8438, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG1183 |
Phigaro v2.4.0 (Database: Jan. 2024 release)