Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 1 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CCGCMFEA_5 | 39512 | 40925 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 97.59 | 99.86 | WP_011681165 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCGCMFEA_1 | 2567095 | 2566391 | WalR | 1.95e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCGCMFEA_1 | 0.0 | 1.0 | 0.0 |
| CCGCMFEA_2 | 1.0 | 0.0 | 1.0 |
| CCGCMFEA_3 | 1.0 | 0.0 | 1.0 |
| CCGCMFEA_4 | 1.0 | 0.0 | 1.0 |
| CCGCMFEA_5 | 1.0 | 0.0 | 1.0 |
| CCGCMFEA_6 | 1.0 | 0.0 | 1.0 |
| CCGCMFEA_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCGCMFEA_1 | 946106 | 984270 | True | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG9860, VOG0536, VOG0152, VOG3307, VOG3643, VOG9671, VOG0044, VOG1563, VOG0198, VOG3355, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG1300, VOG1183, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703, VOG4918, VOG0275, VOG0275, VOG0052, VOG5088 |
| CCGCMFEA_1 | 1857526 | 1869063 | True | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG5532, VOG3624, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG8387, VOG0944 |
| CCGCMFEA_1 | 2044843 | 2087309 | True | Siphoviridae | VOG3477, VOG9953, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG5088, VOG4605, VOG5532, VOG6163, VOG8757, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4553, VOG4573, VOG4556, VOG4556, VOG4844, VOG4841, VOG1345, VOG4549, VOG4570, VOG8916, VOG8916, VOG0944, VOG5532, VOG0198, VOG1563, VOG3643, VOG6470, VOG0152, VOG4237, VOG9741, VOG4693, VOG7735, VOG0025, VOG4799, VOG10867, VOG0181, VOG6428, VOG10059, VOG5353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)