Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NIECIKDA_18 | 13099 | 12392 | WalR | 5.86e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| NIECIKDA_8 | 26860 | 26663 | CspR | 5.71e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NIECIKDA_8 | 26860 | 26666 | CspA | 2.79e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIECIKDA_1 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_2 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_3 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_4 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_5 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_6 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_7 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_8 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_9 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_10 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_11 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_12 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_13 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_14 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_15 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_16 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_17 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_18 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_19 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_20 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_21 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_22 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_23 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_24 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_25 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_26 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_27 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_29 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_30 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_31 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_32 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_33 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_34 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_35 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_36 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_37 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_38 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_39 | 1.0 | 0.0 | 1.0 |
| NIECIKDA_45 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_56 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_61 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_62 | 0.0 | 1.0 | 0.0 |
| NIECIKDA_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIECIKDA_9 | 3128 | 16326 | False | Siphoviridae | VOG8263, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| NIECIKDA_9 | 26357 | 33185 | False | Unknown | VOG4577, VOG6545, VOG0322, VOG0327, VOG5014, VOG4548 |
| NIECIKDA_13 | 2854 | 16220 | False | Siphoviridae | VOG9258, VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581 |
| NIECIKDA_34 | 4199 | 7858 | False | Siphoviridae | VOG3379, VOG9667, VOG8520, VOG8520, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)