Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CBLKHJCC_4 | 14780 | 14073 | WalR | 2.36e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CBLKHJCC_36 | 96097 | 95900 | CspR | 1.75e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CBLKHJCC_36 | 96097 | 95903 | CspA | 8.54e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBLKHJCC_1 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_2 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_3 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_4 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_5 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_6 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_7 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_8 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_9 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_10 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_11 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_12 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_13 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_14 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_15 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_16 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_17 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_18 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_19 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_20 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_21 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_22 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_23 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_24 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_25 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_26 | 1.0 | 0.0 | 1.0 |
| CBLKHJCC_34 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_36 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_37 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_38 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_39 | 0.0 | 1.0 | 0.0 |
| CBLKHJCC_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBLKHJCC_3 | 35900 | 68008 | False | Siphoviridae | VOG4334, VOG8438, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG0637, VOG0195, VOG8279, VOG0275, VOG5562, VOG5998, VOG10643, VOG0536, VOG0586, VOG0025, VOG4799, VOG0514, VOG6545, VOG0322, VOG0535, VOG3947 |
| CBLKHJCC_12 | 292606 | 297557 | False | Myoviridae | VOG10109, VOG4548, VOG1024, VOG5014, VOG0327, VOG0322 |
| CBLKHJCC_12 | 309618 | 323450 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG8263 |
| CBLKHJCC_39 | 81883 | 92712 | False | Siphoviridae | VOG0195, VOG0376, VOG2545, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125 |
Phigaro v2.4.0 (Database: Jan. 2024 release)