Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COPOCKLI_29 | 11658 | 10951 | WalR | 2.42e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| COPOCKLI_23 | 87669 | 87866 | CspR | 2.90e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| COPOCKLI_23 | 87669 | 87863 | CspA | 1.41e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COPOCKLI_1 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_2 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_3 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_4 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_5 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_6 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_7 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_8 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_9 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_11 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_12 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_13 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_14 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_15 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_16 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_17 | 1.0 | 0.0 | 1.0 |
| COPOCKLI_23 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_24 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_25 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_26 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_27 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_28 | 0.0 | 1.0 | 0.0 |
| COPOCKLI_29 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COPOCKLI_5 | 3225 | 19503 | False | Siphoviridae | VOG5601, VOG4856, VOG3462, VOG0801, VOG9258, VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556 |
| COPOCKLI_23 | 182739 | 188122 | False | Siphoviridae | VOG4999, VOG4632, VOG6879, VOG8654, VOG8012, VOG8353, VOG3379, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)