Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AEFCKMDO_3 | 11629 | 10922 | WalR | 1.83e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| AEFCKMDO_55 | 96037 | 95840 | CspR | 2.53e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| AEFCKMDO_55 | 96037 | 95843 | CspA | 1.23e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AEFCKMDO_1 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_2 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_3 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_4 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_5 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_6 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_7 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_8 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_9 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_10 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_11 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_12 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_13 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_14 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_15 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_16 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_17 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_18 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_19 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_20 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_21 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_22 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_23 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_24 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_25 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_26 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_27 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_29 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_30 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_31 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_32 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_33 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_34 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_35 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_36 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_37 | 1.0 | 0.0 | 1.0 |
| AEFCKMDO_38 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_45 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_55 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_56 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_57 | 0.0 | 1.0 | 0.0 |
| AEFCKMDO_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AEFCKMDO_12 | 219766 | 234699 | False | Siphoviridae | VOG3447, VOG0275, VOG9859, VOG1561, VOG0862, VOG6495, VOG9667, VOG4552, VOG1638, VOG4552, VOG2338, VOG0920, VOG1309, VOG0186, VOG8647, VOG0189 |
| AEFCKMDO_34 | 81655 | 101803 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9629, VOG9258, VOG0801, VOG3462, VOG7521, VOG4856, VOG5601 |
Phigaro v2.4.0 (Database: Jan. 2024 release)