Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCKCLCIP_7 | 30391 | 31098 | WalR | 1.20e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HCKCLCIP_34 | 13425 | 13622 | CspR | 1.63e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HCKCLCIP_34 | 13425 | 13619 | CspA | 7.96e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCKCLCIP_1 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_2 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_3 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_4 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_5 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_6 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_7 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_8 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_9 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_10 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_11 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_12 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_13 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_14 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_15 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_16 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_17 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_18 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_19 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_20 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_21 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_22 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_23 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_24 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_25 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_26 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_27 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_28 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_29 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_30 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_31 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_32 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_34 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_35 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_36 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_37 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_38 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_39 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_40 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_42 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_43 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_44 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_45 | 1.0 | 0.0 | 1.0 |
| HCKCLCIP_56 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_57 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_58 | 0.0 | 1.0 | 0.0 |
| HCKCLCIP_59 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCKCLCIP_1 | 323391 | 345214 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG7521, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681 |
| HCKCLCIP_1 | 349559 | 355981 | False | Siphoviridae | VOG8647, VOG0186, VOG1309, VOG0920, VOG2338, VOG7236, VOG1638 |
Phigaro v2.4.0 (Database: Jan. 2024 release)