Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OMBOMAIN_2 | 11652 | 10945 | WalR | 2.42e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| OMBOMAIN_34 | 88092 | 88289 | CspR | 2.74e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| OMBOMAIN_34 | 88092 | 88286 | CspA | 1.34e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMBOMAIN_1 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_2 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_3 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_4 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_5 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_6 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_7 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_8 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_9 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_10 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_11 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_12 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_13 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_14 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_15 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_16 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_17 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_18 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_19 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_20 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_21 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_22 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_23 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_24 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_25 | 1.0 | 0.0 | 1.0 |
| OMBOMAIN_34 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_39 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_40 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_41 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_42 | 0.0 | 1.0 | 0.0 |
| OMBOMAIN_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMBOMAIN_7 | 4950 | 14086 | False | Siphoviridae | VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG2703, VOG1563, VOG8520, VOG4602 |
| OMBOMAIN_12 | 221193 | 234745 | False | Siphoviridae | VOG3447, VOG0275, VOG9859, VOG1561, VOG0862, VOG6495, VOG9667, VOG4552, VOG1638, VOG7236, VOG2338, VOG0920, VOG1309, VOG0186, VOG8647, VOG0189, VOG9667 |
| OMBOMAIN_39 | 3362 | 20799 | False | Siphoviridae | VOG3462, VOG0801, VOG9258, VOG9629, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681 |
Phigaro v2.4.0 (Database: Jan. 2024 release)