Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKHNLIEA_2 | 13199 | 12492 | WalR | 2.31e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DKHNLIEA_45 | 18242 | 18439 | CspR | 1.71e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DKHNLIEA_45 | 18242 | 18436 | CspA | 8.36e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKHNLIEA_1 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_2 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_3 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_4 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_5 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_6 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_7 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_8 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_9 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_10 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_11 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_12 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_13 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_14 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_15 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_16 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_17 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_18 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_19 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_20 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_21 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_22 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_23 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_24 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_25 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_26 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_27 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_28 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_29 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_30 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_31 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_32 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_34 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_35 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_36 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_37 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_38 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_39 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_40 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_41 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_42 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_43 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_45 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_46 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_56 | 1.0 | 0.0 | 1.0 |
| DKHNLIEA_66 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_67 | 0.0 | 1.0 | 0.0 |
| DKHNLIEA_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKHNLIEA_34 | 4175 | 36654 | False | Siphoviridae | VOG1637, VOG4705, VOG4334, VOG8438, VOG4619, VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG10527, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG9107, VOG0637, VOG7265, VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG1563, VOG11003 |
| DKHNLIEA_66 | 29315 | 58612 | False | Siphoviridae | VOG4995, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG10840, VOG0637, VOG0198, VOG8681, VOG0195, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)