Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FAODJOEE_37 | 59511 | 60218 | WalR | 2.45e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FAODJOEE_12 | 87935 | 88132 | CspR | 2.71e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FAODJOEE_12 | 87935 | 88129 | CspA | 1.32e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FAODJOEE_1 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_2 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_3 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_4 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_5 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_6 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_7 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_8 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_9 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_10 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_11 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_12 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_14 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_15 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_16 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_17 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_18 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_19 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_20 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_23 | 1.0 | 0.0 | 1.0 |
| FAODJOEE_32 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_33 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_34 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_35 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_36 | 0.0 | 1.0 | 0.0 |
| FAODJOEE_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FAODJOEE_1 | 678716 | 682880 | False | Siphoviridae | VOG0275, VOG4602, VOG8520, VOG8520, VOG9667, VOG0831, VOG8353 |
| FAODJOEE_7 | 5809 | 19511 | False | Siphoviridae | VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG0801, VOG4619, VOG4626, VOG8438 |
| FAODJOEE_33 | 80160 | 100393 | False | Siphoviridae | VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9629, VOG9258, VOG0801, VOG3462, VOG7521, VOG4856, VOG5601 |
Phigaro v2.4.0 (Database: Jan. 2024 release)