Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MJPFOIGD_67 | 13158 | 12451 | WalR | 2.30e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MJPFOIGD_13 | 18303 | 18500 | CspR | 4.99e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MJPFOIGD_13 | 18303 | 18497 | CspA | 2.43e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MJPFOIGD_1 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_2 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_3 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_4 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_5 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_6 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_7 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_8 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_9 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_10 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_11 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_12 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_13 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_14 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_15 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_16 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_17 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_18 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_19 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_20 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_21 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_22 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_23 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_24 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_25 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_26 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_27 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_28 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_29 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_30 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_31 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_32 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_33 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_34 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_35 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_36 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_37 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_38 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_39 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_40 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_41 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_42 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_43 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_44 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_45 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_46 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_47 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_48 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_49 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_50 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_52 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_53 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_54 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_55 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_56 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_57 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_58 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_59 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_60 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_61 | 1.0 | 0.0 | 1.0 |
| MJPFOIGD_67 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_78 | 0.0 | 1.0 | 0.0 |
| MJPFOIGD_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MJPFOIGD_9 | 6857 | 35184 | False | Siphoviridae | VOG1246, VOG4552, VOG6238, VOG1638, VOG4995, VOG3691, VOG9747, VOG6357, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG4440, VOG8681, VOG0195, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629 |
| MJPFOIGD_14 | 3727 | 25105 | False | Siphoviridae | VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548, VOG7264, VOG4693, VOG7265, VOG0637, VOG9107, VOG0198, VOG1315, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698 |
Phigaro v2.4.0 (Database: Jan. 2024 release)