Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILDDCDDP_53 | 3261 | 2554 | WalR | 4.77e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| ILDDCDDP_24 | 26886 | 26689 | CspR | 7.32e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| ILDDCDDP_24 | 26886 | 26692 | CspA | 3.57e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILDDCDDP_1 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_2 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_13 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_24 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_35 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_41 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_42 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_43 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_44 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_45 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_46 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_47 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_48 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_49 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_50 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_51 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_52 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_53 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_54 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_55 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_56 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_57 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_58 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_59 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_60 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_61 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_62 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_63 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_64 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_65 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_66 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_67 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_68 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_69 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_70 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_72 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_73 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_74 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_75 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_76 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_77 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_78 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_80 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_91 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_102 | 1.0 | 0.0 | 1.0 |
| ILDDCDDP_113 | 0.0 | 1.0 | 0.0 |
| ILDDCDDP_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ILDDCDDP_1 | 262882 | 267534 | False | Siphoviridae | VOG8520, VOG1563, VOG4552, VOG2228, VOG10109, VOG4548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)