Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PELDOEJC_58 | 54693 | 55400 | WalR | 2.30e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| PELDOEJC_10 | 13079 | 13276 | CspR | 5.88e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PELDOEJC_10 | 13079 | 13273 | CspA | 2.87e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PELDOEJC_1 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_2 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_3 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_4 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_5 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_6 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_7 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_8 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_9 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_10 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_11 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_12 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_13 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_14 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_15 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_16 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_17 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_18 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_19 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_20 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_21 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_22 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_23 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_24 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_25 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_26 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_27 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_28 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_29 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_30 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_31 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_32 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_33 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_34 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_35 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_36 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_37 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_39 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_40 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_41 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_42 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_43 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_44 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_45 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_46 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_47 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_48 | 1.0 | 0.0 | 1.0 |
| PELDOEJC_56 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_57 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_58 | 0.0 | 1.0 | 0.0 |
| PELDOEJC_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PELDOEJC_12 | 4716 | 24459 | False | Unknown | VOG0648, VOG5007, VOG10609, VOG6540, VOG5534, VOG6940, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524, VOG6031, VOG5721, VOG0377, VOG5722, VOG0094 |
| PELDOEJC_14 | 8505 | 18970 | False | Siphoviridae | VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699 |
| PELDOEJC_14 | 20770 | 30796 | False | Siphoviridae | VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG0650, VOG1563 |
| PELDOEJC_59 | 1889 | 13092 | False | Siphoviridae | VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681, VOG6422, VOG0198, VOG5336 |
Phigaro v2.4.0 (Database: Jan. 2024 release)