Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DCNOIEPO_2 | 15013 | 14306 | WalR | 2.36e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DCNOIEPO_23 | 18221 | 18418 | CspR | 1.71e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DCNOIEPO_23 | 18221 | 18415 | CspA | 8.36e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCNOIEPO_1 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_2 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_3 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_4 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_5 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_6 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_7 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_8 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_9 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_10 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_11 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_12 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_13 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_14 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_15 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_16 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_17 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_18 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_19 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_20 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_21 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_22 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_23 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_24 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_25 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_26 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_27 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_28 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_29 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_30 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_31 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_32 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_33 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_34 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_35 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_37 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_38 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_39 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_40 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_42 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_43 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_44 | 1.0 | 0.0 | 1.0 |
| DCNOIEPO_45 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_56 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_57 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_58 | 0.0 | 1.0 | 0.0 |
| DCNOIEPO_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCNOIEPO_4 | 4470 | 18013 | False | Siphoviridae | VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| DCNOIEPO_10 | 10906 | 42673 | False | Siphoviridae | VOG0703, VOG1637, VOG4705, VOG4334, VOG8438, VOG4626, VOG4619, VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG5847, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG9107, VOG0637, VOG7265, VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322 |
| DCNOIEPO_57 | 42036 | 50164 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4799, VOG0025, VOG7735, VOG5280, VOG5317, VOG0586 |
| DCNOIEPO_57 | 58733 | 73517 | False | Siphoviridae | VOG0638, VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163 |
| DCNOIEPO_58 | 21364 | 23082 | False | Unknown | VOG8353, VOG0831 |
Phigaro v2.4.0 (Database: Jan. 2024 release)