Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALCJJOCC_2 | 13336 | 12629 | WalR | 2.31e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| ALCJJOCC_34 | 3844 | 4041 | CspR | 1.50e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| ALCJJOCC_34 | 3844 | 4038 | CspA | 7.32e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALCJJOCC_1 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_2 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_3 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_4 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_5 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_6 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_7 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_8 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_9 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_10 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_11 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_12 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_13 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_14 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_15 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_16 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_17 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_18 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_19 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_20 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_21 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_22 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_23 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_24 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_26 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_27 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_28 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_31 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_34 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_45 | 1.0 | 0.0 | 1.0 |
| ALCJJOCC_47 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_48 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_49 | 0.0 | 1.0 | 0.0 |
| ALCJJOCC_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALCJJOCC_50 | 11382 | 16038 | False | Siphoviridae | VOG4606, VOG4632, VOG4675, VOG8353, VOG7894, VOG0831, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)