Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDGBIAHB_2 | 51391 | 52098 | WalR | 2.24e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| EDGBIAHB_45 | 68058 | 68255 | CspR | 2.46e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| EDGBIAHB_45 | 68058 | 68252 | CspA | 1.20e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDGBIAHB_1 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_2 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_3 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_4 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_5 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_6 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_7 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_8 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_9 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_10 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_11 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_12 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_13 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_14 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_15 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_16 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_17 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_18 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_19 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_20 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_21 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_22 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_23 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_24 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_25 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_26 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_27 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_29 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_30 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_31 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_32 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_33 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_34 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_35 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_36 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_45 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_51 | 1.0 | 0.0 | 1.0 |
| EDGBIAHB_52 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_53 | 0.0 | 1.0 | 0.0 |
| EDGBIAHB_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDGBIAHB_8 | 6482 | 34031 | False | Siphoviridae | VOG3547, VOG8426, VOG1300, VOG1638, VOG1563, VOG0650, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG8727, VOG1298, VOG0468, VOG0637, VOG0198, VOG4706, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701 |
| EDGBIAHB_23 | 160884 | 190301 | False | Siphoviridae | VOG6128, VOG0535, VOG0322, VOG6545, VOG0514, VOG4799, VOG0025, VOG0586, VOG0536, VOG5545, VOG5998, VOG5562, VOG0275, VOG8279, VOG0195, VOG0198, VOG6422, VOG8681, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163 |
| EDGBIAHB_34 | 68462 | 73118 | False | Siphoviridae | VOG4606, VOG4632, VOG4675, VOG8353, VOG7894, VOG0831, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)