Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFBMKKDO_40 | 59519 | 60226 | WalR | 2.41e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HFBMKKDO_34 | 93797 | 93600 | CspR | 1.70e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HFBMKKDO_34 | 93797 | 93603 | CspA | 8.29e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HFBMKKDO_20 | 3353 | 4383 | rep38 | 1036 / 1104 | 83.30 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFBMKKDO_1 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_2 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_3 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_4 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_5 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_6 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_7 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_8 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_9 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_10 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_11 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_12 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_13 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_14 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_15 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_16 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_17 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_18 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_19 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_20 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_21 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_22 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_23 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_24 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_25 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_26 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_27 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_28 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_34 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_36 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_37 | 1.0 | 0.0 | 1.0 |
| HFBMKKDO_38 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_39 | 0.0 | 1.0 | 0.0 |
| HFBMKKDO_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFBMKKDO_12 | 8054 | 18939 | False | Siphoviridae | VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG5847, VOG0692, VOG0691, VOG4544, VOG3699 |
| HFBMKKDO_12 | 20931 | 32531 | False | Siphoviridae | VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG0650, VOG1563, VOG8426, VOG11003, VOG8520 |
| HFBMKKDO_36 | 3795 | 18932 | False | Siphoviridae | VOG0801, VOG9258, VOG9629, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681 |
Phigaro v2.4.0 (Database: Jan. 2024 release)