Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AIAHLALG_4 | 54700 | 55407 | WalR | 2.25e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| AIAHLALG_7 | 21954 | 22151 | CspR | 7.27e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| AIAHLALG_7 | 21954 | 22148 | CspA | 3.55e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIAHLALG_1 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_2 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_3 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_4 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_5 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_6 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_7 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_8 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_9 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_10 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_11 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_12 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_13 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_14 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_15 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_16 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_17 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_18 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_19 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_20 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_22 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_23 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_24 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_25 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_26 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_27 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_29 | 1.0 | 0.0 | 1.0 |
| AIAHLALG_34 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_38 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_39 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_40 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_41 | 0.0 | 1.0 | 0.0 |
| AIAHLALG_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AIAHLALG_1 | 3565 | 20049 | False | Siphoviridae | VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462, VOG7521, VOG4856, VOG4334 |
| AIAHLALG_6 | 1229 | 16513 | False | Siphoviridae | VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG4545, VOG0801 |
| AIAHLALG_41 | 69211 | 77241 | False | Siphoviridae | VOG0862, VOG9667, VOG6495, VOG4552, VOG6238, VOG1638, VOG4995, VOG6128, VOG0321, VOG4548, VOG0322 |
Phigaro v2.4.0 (Database: Jan. 2024 release)