Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 608352 | 610277 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| EFDBFFAB_1 | 606782 | 608158 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 606782 | 608157 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 99.93 | AY081910 |
| EFDBFFAB_1 | 608352 | 610277 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 608355 | 610277 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| EFDBFFAB_1 | 606785 | 608158 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_22 | 26994 | 26287 | WalR | 2.66e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| EFDBFFAB_12 | 261661 | 261858 | CspR | 5.30e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| EFDBFFAB_12 | 261661 | 261855 | CspA | 2.58e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFDBFFAB_19 | 134356 | 135559 | repUS43 | 1206 / 1206 | 99.83 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFDBFFAB_1 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_2 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_3 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_4 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_5 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_6 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_7 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_8 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_9 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_10 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_11 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_12 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_13 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_14 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_18 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_19 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_20 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_21 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_22 | 0.0 | 1.0 | 0.0 |
| EFDBFFAB_23 | 1.0 | 0.0 | 1.0 |
| EFDBFFAB_24 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)