Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NAMKNABJ_2 | 27074 | 26367 | WalR | 2.95e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| NAMKNABJ_34 | 88338 | 88535 | CspR | 2.44e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NAMKNABJ_34 | 88338 | 88532 | CspA | 1.19e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAMKNABJ_1 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_2 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_3 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_4 | 1.0 | 0.0 | 1.0 |
| NAMKNABJ_5 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_6 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_7 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_8 | 1.0 | 0.0 | 1.0 |
| NAMKNABJ_9 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_10 | 1.0 | 0.0 | 1.0 |
| NAMKNABJ_11 | 1.0 | 0.0 | 1.0 |
| NAMKNABJ_12 | 1.0 | 0.0 | 1.0 |
| NAMKNABJ_13 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_16 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_23 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_34 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_42 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_43 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_44 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_45 | 0.0 | 1.0 | 0.0 |
| NAMKNABJ_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAMKNABJ_42 | 104459 | 130858 | False | Siphoviridae | VOG11003, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221 |
| NAMKNABJ_43 | 73979 | 103322 | False | Siphoviridae | VOG1563, VOG0650, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548, VOG7264, VOG4693, VOG7265, VOG0637, VOG9107, VOG0198, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801 |
| NAMKNABJ_45 | 83895 | 92171 | False | Siphoviridae | VOG2785, VOG10859, VOG11003, VOG4552, VOG6128, VOG1309, VOG0186, VOG4799, VOG0189, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)