Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDJCHAJJ_34 | 27214 | 26507 | WalR | 2.95e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MDJCHAJJ_12 | 88049 | 88246 | CspR | 2.74e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MDJCHAJJ_12 | 88049 | 88243 | CspA | 1.34e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MDJCHAJJ_8 | 17097 | 18128 | rep38 | 1038 / 1104 | 80.35 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDJCHAJJ_1 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_2 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_3 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_4 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_5 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_6 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_7 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_8 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_9 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_10 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_11 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_12 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_13 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_14 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_15 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_16 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_17 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_18 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_19 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_20 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_21 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_22 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_23 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_24 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_25 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_26 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_27 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_31 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_32 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_33 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_34 | 0.0 | 1.0 | 0.0 |
| MDJCHAJJ_35 | 1.0 | 0.0 | 1.0 |
| MDJCHAJJ_36 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDJCHAJJ_4 | 11956 | 32298 | False | Siphoviridae | VOG4334, VOG5601, VOG4856, VOG7521, VOG3462, VOG0801, VOG9258, VOG9629, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)