Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MICDCHNA_3 | 54921 | 55628 | WalR | 2.33e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MICDCHNA_23 | 50854 | 51051 | CspR | 2.19e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MICDCHNA_23 | 50854 | 51048 | CspA | 1.07e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MICDCHNA_17 | 691 | 1698 | rep38 | 1014 / 1104 | 80.77 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MICDCHNA_1 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_2 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_3 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_4 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_5 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_6 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_7 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_8 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_9 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_10 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_11 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_12 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_13 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_14 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_15 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_16 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_17 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_18 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_19 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_20 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_21 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_22 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_23 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_24 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_25 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_26 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_27 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_28 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_29 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_30 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_31 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_32 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_33 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_34 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_45 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_46 | 0.0 | 1.0 | 0.0 |
| MICDCHNA_47 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_48 | 1.0 | 0.0 | 1.0 |
| MICDCHNA_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MICDCHNA_49 | 6519 | 9582 | False | Siphoviridae | VOG3691, VOG4995, VOG1638, VOG6238, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)