Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OIOLDKHP_39 | 55010 | 55717 | WalR | 2.93e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| OIOLDKHP_34 | 37882 | 38079 | CspR | 2.01e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| OIOLDKHP_34 | 37882 | 38076 | CspA | 9.80e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIOLDKHP_1 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_2 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_3 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_4 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_5 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_6 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_7 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_8 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_9 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_10 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_11 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_12 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_13 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_14 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_15 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_16 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_17 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_18 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_19 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_20 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_21 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_22 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_23 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_24 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_25 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_26 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_27 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_28 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_29 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_30 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_31 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_32 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_34 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_36 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_37 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_38 | 1.0 | 0.0 | 1.0 |
| OIOLDKHP_39 | 0.0 | 1.0 | 0.0 |
| OIOLDKHP_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIOLDKHP_8 | 20110 | 34394 | False | Siphoviridae | VOG4706, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701 |
| OIOLDKHP_10 | 2906 | 8526 | False | Siphoviridae | VOG7236, VOG0920, VOG4552, VOG0535, VOG0283, VOG0514, VOG10904 |
| OIOLDKHP_10 | 13051 | 30126 | False | Siphoviridae | VOG0198, VOG4618, VOG1517, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163 |
| OIOLDKHP_23 | 70962 | 73435 | False | Unknown | VOG4675, VOG8353, VOG7894, VOG0831, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)