Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 13706 | 14191 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| ABCHNEKO_11 | 10286 | 11662 | tet(L) | ARO:3000179 | tet(L) | 98.03 | 100.00 | M11036.1 |
| ABCHNEKO_11 | 8167 | 10092 | tet(M) | ARO:3000186 | tet(M) | 95.79 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 10287 | 11662 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.42 | 99.93 | AY081910 |
| ABCHNEKO_11 | 13706 | 14191 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
| ABCHNEKO_11 | 8167 | 10092 | tet(M) | Doxycycline, Tetracycline, Minocycline | 96.68 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 13709 | 14191 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| ABCHNEKO_11 | 10286 | 11659 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.47 | 100.00 | WP_002294500.1 |
| ABCHNEKO_11 | 8167 | 10089 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 96.57 | 100.00 | WP_063856113.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_2 | 58863 | 59570 | WalR | 2.21e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| ABCHNEKO_35 | 39621 | 39818 | CspR | 1.68e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| ABCHNEKO_35 | 39621 | 39815 | CspA | 2.91e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABCHNEKO_1 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_2 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_3 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_4 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_5 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_6 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_7 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_8 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_9 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_10 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_11 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_12 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_13 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_14 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_15 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_16 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_17 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_18 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_19 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_20 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_21 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_22 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_23 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_24 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_25 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_28 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_29 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_34 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_35 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_36 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_37 | 0.0 | 1.0 | 0.0 |
| ABCHNEKO_38 | 1.0 | 0.0 | 1.0 |
| ABCHNEKO_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABCHNEKO_1 | 193396 | 226846 | False | Siphoviridae | VOG1563, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548, VOG7264, VOG4693, VOG7265, VOG10643, VOG0637, VOG9107, VOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG8000, VOG8438, VOG0804, VOG4705 |
| ABCHNEKO_1 | 276924 | 308976 | False | Siphoviridae | VOG8987, VOG11003, VOG9667, VOG4552, VOG6282, VOG11003, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG6422, VOG1637, VOG0796, VOG10227, VOG0720, VOG4564, VOG0638, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG5904, VOG9657, VOG0641, VOG8294 |
| ABCHNEKO_9 | 17667 | 20479 | False | Unknown | VOG0052, VOG7438, VOG1047 |
| ABCHNEKO_12 | 214351 | 229287 | False | Siphoviridae | VOG0376, VOG2545, VOG0638, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163 |
Phigaro v2.4.0 (Database: Jan. 2024 release)