Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BOOKKOFN_3 | 14815 | 14108 | WalR | 2.37e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| BOOKKOFN_23 | 19048 | 19245 | CspR | 1.43e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| BOOKKOFN_23 | 19048 | 19242 | CspA | 6.99e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOOKKOFN_1 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_2 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_3 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_4 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_5 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_6 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_7 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_8 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_9 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_10 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_11 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_12 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_13 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_14 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_15 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_16 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_17 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_18 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_19 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_20 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_21 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_22 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_23 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_24 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_25 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_26 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_27 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_28 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_29 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_30 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_31 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_32 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_33 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_34 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_35 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_36 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_37 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_38 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_39 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_40 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_41 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_42 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_43 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_44 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_45 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_46 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_47 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_49 | 1.0 | 0.0 | 1.0 |
| BOOKKOFN_54 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_55 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_56 | 0.0 | 1.0 | 0.0 |
| BOOKKOFN_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOOKKOFN_9 | 26721 | 39050 | False | Siphoviridae | VOG4552, VOG4995, VOG9500, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG4440, VOG4841 |
| BOOKKOFN_54 | 52746 | 59122 | False | Siphoviridae | VOG11077, VOG3699, VOG9667, VOG3379, VOG8353, VOG9763, VOG7006, VOG4632, VOG4999 |
Phigaro v2.4.0 (Database: Jan. 2024 release)