Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDHAPOJI_35 | 2076 | 2783 | WalR | 1.80e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CDHAPOJI_34 | 96809 | 96612 | CspR | 1.71e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CDHAPOJI_34 | 96809 | 96615 | CspA | 8.36e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDHAPOJI_1 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_2 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_3 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_4 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_5 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_6 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_7 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_8 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_9 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_10 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_11 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_12 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_13 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_14 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_15 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_16 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_17 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_18 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_19 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_20 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_21 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_22 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_23 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_24 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_25 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_26 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_27 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_28 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_29 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_30 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_31 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_32 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_33 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_34 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_35 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_36 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_37 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_38 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_39 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_40 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_41 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_42 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_43 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_44 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_45 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_46 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_47 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_48 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_49 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_50 | 1.0 | 0.0 | 1.0 |
| CDHAPOJI_56 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_67 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_71 | 0.0 | 1.0 | 0.0 |
| CDHAPOJI_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDHAPOJI_4 | 11380 | 16036 | False | Siphoviridae | VOG4606, VOG4632, VOG4675, VOG8353, VOG7894, VOG0831, VOG4552 |
| CDHAPOJI_8 | 520 | 12868 | False | Siphoviridae | VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG4856, VOG4683, VOG10868, VOG6540, VOG4334 |
| CDHAPOJI_14 | 2165 | 21537 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9629, VOG9258, VOG0801, VOG3462, VOG3462, VOG7521, VOG4856 |
Phigaro v2.4.0 (Database: Jan. 2024 release)