Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LFEOJFON_171330212595WalR2.31e-116transcriptional regulatory protein85.59100.43EPH95667
LFEOJFON_819608095883CspR1.76e-28cold shock protein81.82100.00AAO82613
LFEOJFON_819608095886CspA8.58e-28cold shock protein81.5498.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LFEOJFON_10.01.00.0
LFEOJFON_20.01.00.0
LFEOJFON_100.01.00.0
LFEOJFON_170.01.00.0
LFEOJFON_240.01.00.0
LFEOJFON_310.01.00.0
LFEOJFON_370.01.00.0
LFEOJFON_441.00.01.0
LFEOJFON_500.01.00.0
LFEOJFON_510.01.00.0
LFEOJFON_520.01.00.0
LFEOJFON_530.01.00.0
LFEOJFON_540.01.00.0
LFEOJFON_551.00.01.0
LFEOJFON_561.00.01.0
LFEOJFON_570.01.00.0
LFEOJFON_581.00.01.0
LFEOJFON_591.00.01.0
LFEOJFON_601.00.01.0
LFEOJFON_611.00.01.0
LFEOJFON_630.01.00.0
LFEOJFON_641.00.01.0
LFEOJFON_661.00.01.0
LFEOJFON_671.00.01.0
LFEOJFON_680.01.00.0
LFEOJFON_700.01.00.0
LFEOJFON_711.00.01.0
LFEOJFON_741.00.01.0
LFEOJFON_751.00.01.0
LFEOJFON_761.00.01.0
LFEOJFON_771.00.01.0
LFEOJFON_781.00.01.0
LFEOJFON_810.01.00.0
LFEOJFON_821.00.01.0
LFEOJFON_841.00.01.0
LFEOJFON_900.01.00.0
LFEOJFON_981.00.01.0
LFEOJFON_1050.01.00.0
LFEOJFON_1110.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LFEOJFON_1381417019FalseSiphoviridaeVOG8263, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841
LFEOJFON_12720837006FalseSiphoviridaeVOG4577, VOG2631, VOG0322, VOG0327, VOG5014, VOG1024, VOG4548, VOG10109, VOG2228, VOG4552, VOG1563, VOG8520
LFEOJFON_1173562197075FalseSiphoviridaeVOG3303, VOG3299, VOG8294, VOG0703, VOG1637, VOG4705, VOG6243, VOG4856, VOG6163, VOG4633, VOG3636, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG3707, VOG4564, VOG0720, VOG10904, VOG1517, VOG4694, VOG3477
LFEOJFON_1202744208018FalseSiphoviridaeVOG0189, VOG4566, VOG9438, VOG0514, VOG0283, VOG0535
LFEOJFON_1058001692773FalseSiphoviridaeVOG0198, VOG3477, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements