Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NOOKEGNF_681478114074WalR1.51e-116transcriptional regulatory protein85.59100.43EPH95667
NOOKEGNF_48447253CspA1.54e-32cold shock protein80.0098.48CAA62903
NOOKEGNF_48447256CspR6.94e-32cold shock protein81.2596.97AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
NOOKEGNF_10.01.00.0
NOOKEGNF_20.01.00.0
NOOKEGNF_130.01.00.0
NOOKEGNF_240.01.00.0
NOOKEGNF_350.01.00.0
NOOKEGNF_460.01.00.0
NOOKEGNF_570.01.00.0
NOOKEGNF_680.01.00.0
NOOKEGNF_791.00.01.0
NOOKEGNF_900.01.00.0
NOOKEGNF_1010.01.00.0
NOOKEGNF_1120.01.00.0
NOOKEGNF_1130.01.00.0
NOOKEGNF_1240.01.00.0
NOOKEGNF_1350.01.00.0
NOOKEGNF_1461.00.01.0
NOOKEGNF_1571.00.01.0
NOOKEGNF_1680.01.00.0
NOOKEGNF_1790.01.00.0
NOOKEGNF_1840.01.00.0
NOOKEGNF_1851.00.01.0
NOOKEGNF_1860.01.00.0
NOOKEGNF_1870.01.00.0
NOOKEGNF_1881.00.01.0
NOOKEGNF_1901.00.01.0
NOOKEGNF_1911.00.01.0
NOOKEGNF_1921.00.01.0
NOOKEGNF_1931.00.01.0
NOOKEGNF_1941.00.01.0
NOOKEGNF_1950.01.00.0
NOOKEGNF_1961.00.01.0
NOOKEGNF_1971.00.01.0
NOOKEGNF_1980.01.00.0
NOOKEGNF_1991.00.01.0
NOOKEGNF_2001.00.01.0
NOOKEGNF_2011.00.01.0
NOOKEGNF_2021.00.01.0
NOOKEGNF_2031.00.01.0
NOOKEGNF_2051.00.01.0
NOOKEGNF_2061.00.01.0
NOOKEGNF_2070.01.00.0
NOOKEGNF_2081.00.01.0
NOOKEGNF_2090.01.00.0
NOOKEGNF_2101.00.01.0
NOOKEGNF_2111.00.01.0
NOOKEGNF_2121.00.01.0
NOOKEGNF_2201.00.01.0
NOOKEGNF_2310.01.00.0
NOOKEGNF_2420.01.00.0
NOOKEGNF_2530.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
NOOKEGNF_242785351065FalseSiphoviridaeVOG4552, VOG0535, VOG0322, VOG6545, VOG0514, VOG4799, VOG0025, VOG8639, VOG5545, VOG0637, VOG0198, VOG6422, VOG1315, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629
NOOKEGNF_187145896152162FalseSiphoviridaeVOG4602, VOG8520, VOG11003, VOG8426, VOG1563, VOG0650, VOG0083, VOG0322, VOG7263
NOOKEGNF_2428560491858FalseUnknownVOG9667, VOG6495, VOG10859, VOG8987, VOG11003, VOG6357, VOG0321, VOG4548, VOG0322, VOG6545

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements