Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKPCODGB_22 | 27073 | 26366 | WalR | 2.95e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| EKPCODGB_12 | 88289 | 88486 | CspR | 2.71e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| EKPCODGB_12 | 88289 | 88483 | CspA | 1.32e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EKPCODGB_3 | 3124 | 4007 | rep38 | 890 / 903 | 81.57 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKPCODGB_1 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_2 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_3 | 1.0 | 0.0 | 1.0 |
| EKPCODGB_4 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_5 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_6 | 1.0 | 0.0 | 1.0 |
| EKPCODGB_7 | 1.0 | 0.0 | 1.0 |
| EKPCODGB_8 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_9 | 1.0 | 0.0 | 1.0 |
| EKPCODGB_11 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_12 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_18 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_19 | 1.0 | 0.0 | 1.0 |
| EKPCODGB_20 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_21 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_22 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_23 | 0.0 | 1.0 | 0.0 |
| EKPCODGB_24 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKPCODGB_6 | 3238 | 19749 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG7521, VOG3462, VOG0801, VOG9258, VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556 |
| EKPCODGB_18 | 81371 | 84664 | False | Unknown | VOG8353, VOG0831, VOG9667, VOG8520, VOG8520 |
| EKPCODGB_23 | 38078 | 70764 | True | Siphoviridae | VOG4548, VOG1724, VOG9874, VOG11003, VOG0083, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG8909, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)