Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDLNMDOO_2 | 54740 | 55447 | WalR | 2.38e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HDLNMDOO_5 | 37983 | 38180 | CspR | 7.50e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HDLNMDOO_5 | 37983 | 38177 | CspA | 3.66e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDLNMDOO_1 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_2 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_3 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_4 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_5 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_6 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_7 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_8 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_9 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_10 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_11 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_12 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_13 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_14 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_15 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_16 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_17 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_18 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_19 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_20 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_21 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_22 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_23 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_24 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_25 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_26 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_27 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_28 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_29 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_30 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_31 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_32 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_33 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_34 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_35 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_36 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_37 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_38 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_40 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_41 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_42 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_43 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_44 | 1.0 | 0.0 | 1.0 |
| HDLNMDOO_51 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_55 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_56 | 0.0 | 1.0 | 0.0 |
| HDLNMDOO_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDLNMDOO_23 | 3379 | 34878 | False | Siphoviridae | VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548, VOG7264, VOG4693, VOG7265, VOG0637, VOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG5847, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG0801, VOG4619, VOG8438, VOG4334, VOG4705 |
| HDLNMDOO_43 | 33597 | 58634 | False | Siphoviridae | VOG0054, VOG1637, VOG4705, VOG4334, VOG4856, VOG7521, VOG3462, VOG0801, VOG9258, VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681, VOG1315, VOG6422, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)