Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EOCJNOEK_65 | 12949 | 12242 | WalR | 2.29e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| EOCJNOEK_4 | 36228 | 36031 | CspR | 8.11e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| EOCJNOEK_4 | 36228 | 36034 | CspA | 3.96e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EOCJNOEK_1 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_2 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_3 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_4 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_5 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_6 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_7 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_8 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_9 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_10 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_11 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_12 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_13 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_14 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_15 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_16 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_17 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_18 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_19 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_20 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_21 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_22 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_23 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_24 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_25 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_26 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_27 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_28 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_29 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_30 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_31 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_32 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_33 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_34 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_35 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_36 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_37 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_38 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_40 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_41 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_42 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_43 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_44 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_45 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_48 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_49 | 1.0 | 0.0 | 1.0 |
| EOCJNOEK_56 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_63 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_64 | 0.0 | 1.0 | 0.0 |
| EOCJNOEK_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EOCJNOEK_2 | 9411 | 11884 | False | Unknown | VOG4675, VOG8353, VOG7894, VOG0831, VOG4552 |
| EOCJNOEK_5 | 5386 | 18544 | False | Siphoviridae | VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG0801, VOG4619, VOG8438 |
| EOCJNOEK_15 | 2032 | 17233 | False | Siphoviridae | VOG0801, VOG4545, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0198, VOG0638 |
| EOCJNOEK_34 | 54157 | 76763 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG3462, VOG0801, VOG6163, VOG0817, VOG0725, VOG0799, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG3699, VOG8681, VOG6422, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)