Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DPHALNCB_3 | 17095 | 17802 | WalR | 1.71e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DPHALNCB_59 | 13206 | 13403 | CspR | 1.63e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DPHALNCB_59 | 13206 | 13400 | CspA | 7.95e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DPHALNCB_18 | 2817 | 3700 | rep38 | 885 / 903 | 80.68 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPHALNCB_1 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_2 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_3 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_4 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_5 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_6 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_7 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_8 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_9 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_10 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_11 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_12 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_13 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_14 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_15 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_16 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_17 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_18 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_19 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_20 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_21 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_22 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_23 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_24 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_25 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_26 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_27 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_28 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_29 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_30 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_31 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_32 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_33 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_34 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_35 | 1.0 | 0.0 | 1.0 |
| DPHALNCB_45 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_56 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_59 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_60 | 0.0 | 1.0 | 0.0 |
| DPHALNCB_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DPHALNCB_7 | 4178 | 29900 | False | Siphoviridae | VOG0801, VOG9258, VOG9629, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG9107, VOG0637, VOG5545, VOG11063, VOG6909, VOG10643, VOG4693, VOG5579, VOG9667, VOG0189, VOG8647, VOG4623, VOG0186, VOG1309, VOG4995, VOG4552 |
| DPHALNCB_8 | 9007 | 19502 | False | Siphoviridae | VOG9763, VOG0698, VOG0697, VOG0695, VOG4555, VOG5847, VOG10527, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)