Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NECODGLP_38 | 342 | 2261 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NECODGLP_114 | 25273 | 26372 | tet(40) | Doxycycline, Tetracycline | 99.36 | 90.09 | FJ158002 |
| NECODGLP_38 | 342 | 2261 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NECODGLP_38 | 345 | 2261 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| NECODGLP_114 | 25276 | 26445 | tet(40) | tetracycline efflux MFS transporter Tet(40) | INTERNAL_STOP | 92.41 | 97.29 | WP_009247026.1 |
| NECODGLP_110 | 11437 | 11637 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NECODGLP_1 | 0.0 | 1.0 | 0.0 |
| NECODGLP_2 | 0.0 | 1.0 | 0.0 |
| NECODGLP_3 | 0.0 | 1.0 | 0.0 |
| NECODGLP_4 | 0.0 | 1.0 | 0.0 |
| NECODGLP_5 | 1.0 | 0.0 | 1.0 |
| NECODGLP_6 | 1.0 | 0.0 | 1.0 |
| NECODGLP_7 | 0.0 | 1.0 | 0.0 |
| NECODGLP_8 | 1.0 | 0.0 | 1.0 |
| NECODGLP_9 | 0.0 | 1.0 | 0.0 |
| NECODGLP_10 | 0.0 | 1.0 | 0.0 |
| NECODGLP_11 | 0.0 | 1.0 | 0.0 |
| NECODGLP_12 | 1.0 | 0.0 | 1.0 |
| NECODGLP_13 | 1.0 | 0.0 | 1.0 |
| NECODGLP_14 | 1.0 | 0.0 | 1.0 |
| NECODGLP_15 | 0.0 | 1.0 | 0.0 |
| NECODGLP_16 | 1.0 | 0.0 | 1.0 |
| NECODGLP_17 | 0.0 | 1.0 | 0.0 |
| NECODGLP_19 | 1.0 | 0.0 | 1.0 |
| NECODGLP_20 | 1.0 | 0.0 | 1.0 |
| NECODGLP_21 | 1.0 | 0.0 | 1.0 |
| NECODGLP_22 | 0.0 | 1.0 | 0.0 |
| NECODGLP_23 | 1.0 | 0.0 | 1.0 |
| NECODGLP_25 | 1.0 | 0.0 | 1.0 |
| NECODGLP_26 | 1.0 | 0.0 | 1.0 |
| NECODGLP_27 | 0.0 | 1.0 | 0.0 |
| NECODGLP_28 | 1.0 | 0.0 | 1.0 |
| NECODGLP_29 | 1.0 | 0.0 | 1.0 |
| NECODGLP_30 | 1.0 | 0.0 | 1.0 |
| NECODGLP_31 | 1.0 | 0.0 | 1.0 |
| NECODGLP_32 | 1.0 | 0.0 | 1.0 |
| NECODGLP_33 | 0.0 | 1.0 | 0.0 |
| NECODGLP_34 | 0.0 | 1.0 | 0.0 |
| NECODGLP_35 | 1.0 | 0.0 | 1.0 |
| NECODGLP_36 | 1.0 | 0.0 | 1.0 |
| NECODGLP_37 | 0.0 | 1.0 | 0.0 |
| NECODGLP_38 | 1.0 | 0.0 | 1.0 |
| NECODGLP_39 | 1.0 | 0.0 | 1.0 |
| NECODGLP_41 | 0.0 | 1.0 | 0.0 |
| NECODGLP_44 | 0.0 | 1.0 | 0.0 |
| NECODGLP_45 | 1.0 | 0.0 | 1.0 |
| NECODGLP_46 | 0.0 | 1.0 | 0.0 |
| NECODGLP_47 | 1.0 | 0.0 | 1.0 |
| NECODGLP_48 | 1.0 | 0.0 | 1.0 |
| NECODGLP_49 | 1.0 | 0.0 | 1.0 |
| NECODGLP_50 | 1.0 | 0.0 | 1.0 |
| NECODGLP_51 | 1.0 | 0.0 | 1.0 |
| NECODGLP_52 | 1.0 | 0.0 | 1.0 |
| NECODGLP_54 | 1.0 | 0.0 | 1.0 |
| NECODGLP_55 | 0.0 | 1.0 | 0.0 |
| NECODGLP_56 | 1.0 | 0.0 | 1.0 |
| NECODGLP_57 | 0.0 | 1.0 | 0.0 |
| NECODGLP_58 | 1.0 | 0.0 | 1.0 |
| NECODGLP_59 | 0.0 | 1.0 | 0.0 |
| NECODGLP_60 | 1.0 | 0.0 | 1.0 |
| NECODGLP_61 | 1.0 | 0.0 | 1.0 |
| NECODGLP_63 | 0.0 | 1.0 | 0.0 |
| NECODGLP_64 | 0.0 | 1.0 | 0.0 |
| NECODGLP_66 | 0.0 | 1.0 | 0.0 |
| NECODGLP_67 | 0.0 | 1.0 | 0.0 |
| NECODGLP_68 | 1.0 | 0.0 | 1.0 |
| NECODGLP_69 | 1.0 | 0.0 | 1.0 |
| NECODGLP_70 | 0.0 | 1.0 | 0.0 |
| NECODGLP_71 | 0.0 | 1.0 | 0.0 |
| NECODGLP_72 | 1.0 | 0.0 | 1.0 |
| NECODGLP_73 | 0.0 | 1.0 | 0.0 |
| NECODGLP_74 | 0.0 | 1.0 | 0.0 |
| NECODGLP_75 | 0.0 | 1.0 | 0.0 |
| NECODGLP_76 | 0.0 | 1.0 | 0.0 |
| NECODGLP_77 | 0.0 | 1.0 | 0.0 |
| NECODGLP_78 | 0.0 | 1.0 | 0.0 |
| NECODGLP_79 | 0.0 | 1.0 | 0.0 |
| NECODGLP_80 | 0.0 | 1.0 | 0.0 |
| NECODGLP_81 | 0.0 | 1.0 | 0.0 |
| NECODGLP_82 | 0.0 | 1.0 | 0.0 |
| NECODGLP_83 | 0.0 | 1.0 | 0.0 |
| NECODGLP_84 | 0.0 | 1.0 | 0.0 |
| NECODGLP_85 | 0.0 | 1.0 | 0.0 |
| NECODGLP_86 | 0.0 | 1.0 | 0.0 |
| NECODGLP_87 | 0.0 | 1.0 | 0.0 |
| NECODGLP_88 | 0.0 | 1.0 | 0.0 |
| NECODGLP_89 | 0.0 | 1.0 | 0.0 |
| NECODGLP_90 | 0.0 | 1.0 | 0.0 |
| NECODGLP_91 | 0.0 | 1.0 | 0.0 |
| NECODGLP_92 | 0.0 | 1.0 | 0.0 |
| NECODGLP_93 | 0.0 | 1.0 | 0.0 |
| NECODGLP_94 | 0.0 | 1.0 | 0.0 |
| NECODGLP_95 | 0.0 | 1.0 | 0.0 |
| NECODGLP_96 | 0.0 | 1.0 | 0.0 |
| NECODGLP_97 | 0.0 | 1.0 | 0.0 |
| NECODGLP_98 | 0.0 | 1.0 | 0.0 |
| NECODGLP_99 | 0.0 | 1.0 | 0.0 |
| NECODGLP_100 | 0.0 | 1.0 | 0.0 |
| NECODGLP_101 | 0.0 | 1.0 | 0.0 |
| NECODGLP_102 | 0.0 | 1.0 | 0.0 |
| NECODGLP_103 | 0.0 | 1.0 | 0.0 |
| NECODGLP_104 | 1.0 | 0.0 | 1.0 |
| NECODGLP_105 | 0.0 | 1.0 | 0.0 |
| NECODGLP_106 | 0.0 | 1.0 | 0.0 |
| NECODGLP_107 | 0.0 | 1.0 | 0.0 |
| NECODGLP_108 | 0.0 | 1.0 | 0.0 |
| NECODGLP_109 | 0.0 | 1.0 | 0.0 |
| NECODGLP_110 | 0.0 | 1.0 | 0.0 |
| NECODGLP_111 | 1.0 | 0.0 | 1.0 |
| NECODGLP_112 | 0.0 | 1.0 | 0.0 |
| NECODGLP_113 | 0.0 | 1.0 | 0.0 |
| NECODGLP_114 | 0.0 | 1.0 | 0.0 |
| NECODGLP_115 | 0.0 | 1.0 | 0.0 |
| NECODGLP_116 | 1.0 | 0.0 | 1.0 |
| NECODGLP_117 | 1.0 | 0.0 | 1.0 |
| NECODGLP_118 | 0.0 | 1.0 | 0.0 |
| NECODGLP_119 | 1.0 | 0.0 | 1.0 |
| NECODGLP_120 | 1.0 | 0.0 | 1.0 |
| NECODGLP_121 | 0.0 | 1.0 | 0.0 |
| NECODGLP_122 | 0.0 | 1.0 | 0.0 |
| NECODGLP_123 | 1.0 | 0.0 | 1.0 |
| NECODGLP_124 | 0.0 | 1.0 | 0.0 |
| NECODGLP_125 | 0.0 | 1.0 | 0.0 |
| NECODGLP_126 | 0.0 | 1.0 | 0.0 |
| NECODGLP_127 | 0.0 | 1.0 | 0.0 |
| NECODGLP_128 | 0.0 | 1.0 | 0.0 |
| NECODGLP_129 | 0.0 | 1.0 | 0.0 |
| NECODGLP_130 | 0.0 | 1.0 | 0.0 |
| NECODGLP_131 | 1.0 | 0.0 | 1.0 |
| NECODGLP_132 | 0.0 | 1.0 | 0.0 |
| NECODGLP_133 | 1.0 | 0.0 | 1.0 |
| NECODGLP_134 | 0.0 | 1.0 | 0.0 |
| NECODGLP_135 | 1.0 | 0.0 | 1.0 |
| NECODGLP_136 | 0.0 | 1.0 | 0.0 |
| NECODGLP_137 | 0.0 | 1.0 | 0.0 |
| NECODGLP_138 | 1.0 | 0.0 | 1.0 |
| NECODGLP_139 | 1.0 | 0.0 | 1.0 |
| NECODGLP_140 | 1.0 | 0.0 | 1.0 |
| NECODGLP_141 | 0.0 | 1.0 | 0.0 |
| NECODGLP_142 | 0.0 | 1.0 | 0.0 |
| NECODGLP_143 | 0.0 | 1.0 | 0.0 |
| NECODGLP_144 | 0.0 | 1.0 | 0.0 |
| NECODGLP_145 | 0.0 | 1.0 | 0.0 |
| NECODGLP_146 | 1.0 | 0.0 | 1.0 |
| NECODGLP_147 | 0.0 | 1.0 | 0.0 |
| NECODGLP_148 | 0.0 | 1.0 | 0.0 |
| NECODGLP_149 | 0.0 | 1.0 | 0.0 |
| NECODGLP_150 | 0.0 | 1.0 | 0.0 |
| NECODGLP_151 | 1.0 | 0.0 | 1.0 |
| NECODGLP_152 | 1.0 | 0.0 | 1.0 |
| NECODGLP_153 | 1.0 | 0.0 | 1.0 |
| NECODGLP_154 | 0.0 | 1.0 | 0.0 |
| NECODGLP_155 | 0.0 | 1.0 | 0.0 |
| NECODGLP_156 | 1.0 | 0.0 | 1.0 |
| NECODGLP_157 | 0.0 | 1.0 | 0.0 |
| NECODGLP_158 | 1.0 | 0.0 | 1.0 |
| NECODGLP_159 | 1.0 | 0.0 | 1.0 |
| NECODGLP_160 | 0.0 | 1.0 | 0.0 |
| NECODGLP_161 | 1.0 | 0.0 | 1.0 |
| NECODGLP_163 | 0.0 | 1.0 | 0.0 |
| NECODGLP_164 | 0.0 | 1.0 | 0.0 |
| NECODGLP_165 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NECODGLP_77 | 104885 | 112804 | False | Siphoviridae | VOG4545, |
| NECODGLP_110 | 38625 | 53957 | False | Siphoviridae | VOG6495, |
| NECODGLP_121 | 90065 | 107594 | False | Siphoviridae | VOG2352, |
| NECODGLP_143 | 5267 | 22653 | True | Siphoviridae | VOG1654, |
Phigaro v2.4.0 (Database: Jan. 2024 release)