Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKFBPKFJ_71 | 22929 | 24848 | tet(O) | ARO:3000190 | tet(O) | 99.06 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKFBPKFJ_71 | 22929 | 24848 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.38 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKFBPKFJ_71 | 22929 | 24845 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.53 | 100.00 | WP_012669445.1 |
| PKFBPKFJ_67 | 8241 | 8441 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PKFBPKFJ_2 | 160 | 313 | Col156 | 154 / 154 | 94.81 | NC009781 |
| PKFBPKFJ_9 | 1090 | 1351 | Col(MG828) | 262 / 262 | 91.98 | NC008486 |
| PKFBPKFJ_108 | 1249 | 1380 | ColRNAI | 132 / 130 | 89.39 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKFBPKFJ_1 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_2 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_3 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_4 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_5 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_6 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_7 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_8 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_9 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_11 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_12 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_13 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_14 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_15 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_16 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_17 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_18 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_19 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_20 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_21 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_24 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_25 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_26 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_27 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_28 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_29 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_30 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_31 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_32 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_33 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_34 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_35 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_36 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_37 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_38 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_39 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_40 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_41 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_42 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_43 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_44 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_45 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_46 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_47 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_48 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_49 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_50 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_51 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_52 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_53 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_54 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_55 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_56 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_57 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_58 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_59 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_60 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_61 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_62 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_63 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_64 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_65 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_66 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_67 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_68 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_69 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_70 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_71 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_72 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_73 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_74 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_75 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_76 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_77 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_78 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_79 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_80 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_81 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_82 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_83 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_84 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_85 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_86 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_87 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_88 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_89 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_90 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_91 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_92 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_93 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_94 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_95 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_96 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_97 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_98 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_99 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_100 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_101 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_102 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_103 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_104 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_105 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_107 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_108 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_109 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_110 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_111 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_112 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_113 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_114 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_115 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_116 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_117 | 0.0 | 1.0 | 0.0 |
| PKFBPKFJ_118 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_119 | 1.0 | 0.0 | 1.0 |
| PKFBPKFJ_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKFBPKFJ_27 | 10444 | 21865 | False | Siphoviridae | VOG10901, |
| PKFBPKFJ_88 | 58851 | 71107 | False | Siphoviridae | VOG0691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)