Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOONPHDL_15 | 105053 | 106972 | tet(O) | ARO:3000190 | tet(O) | 99.06 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BOONPHDL_15 | 105053 | 106972 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.38 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOONPHDL_15 | 105056 | 106972 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.53 | 100.00 | WP_012669445.1 |
| BOONPHDL_59 | 7568 | 7768 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BOONPHDL_90 | 2104 | 2684 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOONPHDL_1 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_2 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_3 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_4 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_5 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_7 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_8 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_10 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_11 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_12 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_13 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_14 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_15 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_16 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_17 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_18 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_19 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_20 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_21 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_22 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_24 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_25 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_26 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_27 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_28 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_29 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_30 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_31 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_32 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_33 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_34 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_35 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_36 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_37 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_38 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_39 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_40 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_41 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_42 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_43 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_44 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_45 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_46 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_47 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_48 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_49 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_50 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_51 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_52 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_53 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_54 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_55 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_56 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_57 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_58 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_59 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_60 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_61 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_62 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_63 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_64 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_65 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_66 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_67 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_68 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_69 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_70 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_71 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_72 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_73 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_74 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_75 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_76 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_77 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_78 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_79 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_80 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_81 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_82 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_83 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_84 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_85 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_86 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_87 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_88 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_89 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_90 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_91 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_92 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_93 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_94 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_95 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_96 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_97 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_98 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_99 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_100 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_101 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_102 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_105 | 0.0 | 1.0 | 0.0 |
| BOONPHDL_107 | 1.0 | 0.0 | 1.0 |
| BOONPHDL_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOONPHDL_12 | 13759 | 29323 | False | Siphoviridae | VOG5668, |
| BOONPHDL_42 | 58851 | 71107 | False | Siphoviridae | VOG0691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)