Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJNPCCEG_4 | 8287 | 10206 | tet(O) | ARO:3000190 | tet(O) | 99.06 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJNPCCEG_4 | 8287 | 10206 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.38 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJNPCCEG_4 | 8290 | 10206 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.53 | 100.00 | WP_012669445.1 |
| PJNPCCEG_193 | 4290 | 4490 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJNPCCEG_1 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_2 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_3 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_4 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_5 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_6 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_7 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_8 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_9 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_10 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_11 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_12 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_13 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_14 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_15 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_16 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_17 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_18 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_19 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_20 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_21 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_22 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_23 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_24 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_25 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_26 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_27 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_28 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_29 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_30 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_31 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_32 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_33 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_34 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_35 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_36 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_37 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_38 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_39 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_40 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_41 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_42 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_43 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_44 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_45 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_46 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_47 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_48 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_49 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_50 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_51 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_52 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_53 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_54 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_55 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_56 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_57 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_58 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_59 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_60 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_61 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_62 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_63 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_64 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_65 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_66 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_67 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_68 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_69 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_71 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_72 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_73 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_74 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_75 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_76 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_77 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_78 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_79 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_80 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_81 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_82 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_83 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_84 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_87 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_88 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_89 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_90 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_91 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_92 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_93 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_94 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_95 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_96 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_97 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_98 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_99 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_100 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_101 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_102 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_104 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_105 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_106 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_107 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_108 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_109 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_110 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_111 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_112 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_113 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_114 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_115 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_116 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_117 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_118 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_120 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_121 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_122 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_123 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_124 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_125 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_126 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_128 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_129 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_130 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_131 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_132 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_133 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_134 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_136 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_137 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_139 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_140 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_141 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_142 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_143 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_144 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_145 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_146 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_147 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_148 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_149 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_150 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_151 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_152 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_153 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_154 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_155 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_156 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_157 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_158 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_159 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_160 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_161 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_162 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_163 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_164 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_165 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_166 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_167 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_168 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_169 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_170 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_171 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_172 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_173 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_174 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_175 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_176 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_177 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_178 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_179 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_180 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_181 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_182 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_183 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_184 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_185 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_186 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_187 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_188 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_189 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_190 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_191 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_192 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_193 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_194 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_195 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_196 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_197 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_198 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_199 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_200 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_201 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_202 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_203 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_204 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_205 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_206 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_207 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_208 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_209 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_210 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_211 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_212 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_213 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_214 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_215 | 1.0 | 0.0 | 1.0 |
| PJNPCCEG_216 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_217 | 0.0 | 1.0 | 0.0 |
| PJNPCCEG_218 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJNPCCEG_111 | 20602 | 35279 | False | Siphoviridae | VOG9113, |
| PJNPCCEG_144 | 8962 | 15635 | False | Siphoviridae | VOG0697, |
Phigaro v2.4.0 (Database: Jan. 2024 release)