Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPMMGMEN_37 | 3957 | 5876 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPMMGMEN_136 | 27259 | 28358 | tet(40) | Doxycycline, Tetracycline | 99.36 | 90.09 | FJ158002 |
| GPMMGMEN_37 | 3957 | 5876 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPMMGMEN_37 | 3957 | 5873 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| GPMMGMEN_136 | 27262 | 28431 | tet(40) | tetracycline efflux MFS transporter Tet(40) | INTERNAL_STOP | 92.41 | 97.29 | WP_009247026.1 |
| GPMMGMEN_124 | 11437 | 11637 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPMMGMEN_1 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_2 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_3 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_4 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_5 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_6 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_7 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_8 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_9 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_10 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_11 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_12 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_13 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_14 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_15 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_16 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_18 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_19 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_20 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_21 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_22 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_23 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_25 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_26 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_28 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_29 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_30 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_31 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_32 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_33 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_34 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_35 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_36 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_37 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_38 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_39 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_40 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_41 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_42 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_43 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_44 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_45 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_46 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_47 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_48 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_49 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_50 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_52 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_53 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_54 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_55 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_56 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_57 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_58 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_59 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_60 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_62 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_63 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_64 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_66 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_67 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_68 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_69 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_70 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_71 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_72 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_73 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_74 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_75 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_76 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_77 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_79 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_80 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_81 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_82 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_83 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_84 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_86 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_87 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_88 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_89 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_90 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_91 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_92 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_93 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_94 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_95 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_96 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_97 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_98 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_99 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_100 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_101 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_102 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_103 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_104 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_105 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_106 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_107 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_108 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_109 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_110 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_111 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_112 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_113 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_114 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_115 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_116 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_117 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_119 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_120 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_121 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_122 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_123 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_124 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_125 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_126 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_127 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_128 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_129 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_130 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_131 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_132 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_133 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_134 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_135 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_136 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_137 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_138 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_139 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_140 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_141 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_142 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_143 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_144 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_145 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_146 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_147 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_148 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_149 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_151 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_152 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_153 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_154 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_155 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_156 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_157 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_158 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_159 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_160 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_161 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_162 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_163 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_164 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_165 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_166 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_167 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_168 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_169 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_170 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_171 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_172 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_173 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_174 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_175 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_176 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_177 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_178 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_179 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_180 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_181 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_182 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_183 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_184 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_185 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_186 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_187 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_188 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_189 | 0.0 | 1.0 | 0.0 |
| GPMMGMEN_190 | 1.0 | 0.0 | 1.0 |
| GPMMGMEN_191 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPMMGMEN_99 | 104825 | 112744 | False | Siphoviridae | VOG4545, |
| GPMMGMEN_103 | 90065 | 107594 | False | Siphoviridae | VOG2352, |
| GPMMGMEN_112 | 117526 | 130809 | True | Unknown | VOG5036, |
| GPMMGMEN_124 | 38393 | 53957 | False | Siphoviridae | VOG5668, |
Phigaro v2.4.0 (Database: Jan. 2024 release)